HISPID5

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This is the development version of HISPID5. HISPID5 consists of two XML schemas that are based on ABCD2.06 (plus it imports ABCD2.06 itself). These files are available via the subversion repository on the BIG development site.

The field definitions are detailed below in the groups used in previous HISPID3 and HISPID4.

The mapping (or really the field definition) can be one of the following:

  • an identified ABCD concept or concepts - this is the usual case.
  • an identified ABCD concept with a HISPID5 restriction - fields are still valid ABCD
  • a concept in the HISPID extension to ABCD - this represents a new element that is required by the HISCOM community and not catered for in ABCD (again, valid ABCD, but of limited accessibility to anyone not using HISPID)

There is also a list of fields that were in HISPID3 and HISPID4 that are no longer to be used.



Contents

[edit]

Metadata (was File Identifier)

[edit]

startfile

Maps to: DataSets the root element of the ABCD Schema


[edit]

endfile

implied by xml schema


[edit]

version

defined by Schema default namespace e.g. http://www.chah.org.au/schemas/hispid/5


[edit]

datefile

Maps to: /DataSets/DataSet/Metadata/RevisionData/DateModified


[edit]

institute

Maps to: DataSets/DataSet/Metadata/Owners/Owner/Organisation


[edit]

contact

Maps to: DataSets/DataSet/ContentContacts/ContentContact/Name

AND / OR /DataSets/DataSet/TechnicalContacts/TechnicalContact/Name


[edit]

address

Maps to: /DataSets/DataSet/ContentContacts/ContentContact/Address

AND / OR /DataSets/DataSet/TechnicalContacts/TechnicalContact/Address


[edit]

phone

Maps to: /DataSets/DataSet/ContentContacts/ContentContact/Phone

AND / OR /DataSets/DataSet/TechnicalContacts/TechnicalContact/Phone


[edit]

fax

Maps to: /DataSets/DataSet/Metadata/Owners/Owner/TelephoneNumbers/TelephoneNumber/Number + /DataSets/DataSet/Metadata/Owners/Owner/TelephoneNumbers/TelephoneNumber/Device = "fax"


[edit]

email

Maps to: DataSets/DataSet/ContentContacts/ContentContact/Email

AND / OR DataSets/DataSet/TechnicalContacts/TechnicalContact/Email




[edit]

content

Maps to: DataSets/DataSet/Metadata/Description/Representation/Details. However, as ABCD requires Datasets/Dataset/Metadata/Description/Representation/Title, this needs also to be supplied.

[edit]

Accession Identifier

[edit]

Institution Code (insid)

Maps to: SourceInstitutionID


[edit]

Accession Identifier (accid)

Maps to: UnitID



[edit]

Basis of Record

[edit]

Record Source (recsou)

Maps to: /RecordBasis

notes: Use ABCD vocabulary, current HISPID values mapped to:

  • PreservedSpecimen (HISPID3 - Collection)
  • LivingSpecimen (HISPID3 - no equivalent)
  • FossilSpecimen (HISPID3 - no equivalent)
  • OtherSpecimen (HISPID3 - no equivalent)
  • HumanObservation (HISPID3 - observation)
  • MachineObservation (HISPID3 - observation)
  • DrawingOrPhotograph (HISPID3 - Photograph)
  • MultimediaObject (HISPID3 - no equivalent)
[edit]

Record Identification

[edit]

Supra-family (supfam)

Maps to: ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName + e.g. ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank = "phylum"

notes: e.g. "Macropodoidea", "Lamiales", "Angiospermae". Differs from HISPID in that as many higher taxon names and ranks can be applied to the record. Note that if a record is determined only to a genus or higher rank then the genusOrMonomial element must be filled.

The HigherTaxonRankEnum should be extended to add extra values: subgenus, section, subsection, series, subseries. This is doucumented in the Hispid extension (but probably should just be sent to ABCD working group as suggestions for inclusion into ABCD) and we keep using the ABCD values (seeing as we never had them before in HIPSID anyway).


[edit]

Family (fam)

Maps to: ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName + ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank = "familia"

notes: e.g. "Asteraceae". See note under Supra-family.


[edit]

Supra-genus (supgen)

Maps to: ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName + ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank = "supergenus"

notes: e.g. "Astereae". See note under Supra-family.


[edit]

Hybrid Flag (hyb)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/HybridFlag + @insertionpoint=1

notes: (HISPID assumes genus-level hybrid). Use HISPID vocabulary.

- for named hybrids and graft chimeras.


[edit]

Name Formula (for hybrids and other formulas)

Maps to HISPID5 extension: /HispidIdentification/NameFormula

NEW in HISPID5

notes: Better solution would be if ABCD was extended to use TCS.


[edit]

Genus (gen)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/GenusOrMonomial

notes: e.g. "Eucalyptus"


[edit]

Subgenus (subgen)

Maps to: ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName + ~/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank = "subgenus"

notes: e.g. "Monocalyptus". See note under Supra-family.


[edit]

Species Qualifier (spql)

Maps to: ~/TaxonIdentified/ScientificName/NameAddendum

with the following HISPID5 restrictions:

  • agg.
  • s. lat.
  • s. str.


[edit]

Species Epithet (sp)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/FirstEpithet

Note: Hybrids are dealt with in Name Formula


[edit]

Species Author (spau)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/AuthorTeamParenthesis + ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/AuthorTeam

notes: Only lowest level is included in ABCD, so ABCD strict fields should not be filled in if this has an infraspecific name (not an autonym).


[edit]

Infraspecific Rank (isprk)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/Rank

notes: Only lowest level rank is included in ABCD.


[edit]

Infraspecific Epithet (isp)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/InfraspecificEpithet


[edit]

Infraspecific Author (ispau)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/AuthorTeamParenthesis + ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/AuthorTeam

notes: Only lowest level authorship is included in ABCD.


[edit]

Vernacular Names (vernam)

Maps to: ~/TaxonIdentified/InformalNameString


[edit]

Cultivar Group Name (culgnam)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/CultivarGroupName


[edit]

Cultivar Name (culnam)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/CultivarName


[edit]

Trade Designation Name (tranam)

Maps to: ~/TaxonIdentified/ScientificName/NameAtomised/Botanical/TradeDesignationNames/TradeDesignationName


[edit]

Full Name (fulnam)

Maps to: ~/TaxonIdentified/ScientificName/FullScientificNameString


[edit]

Name Comments (namcom)

Maps to: ~/TaxonIdentified/NameComments



[edit]

Typification

[edit]

Type Qualifier Flag (tql)

Maps to: /SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/DoubtfulFlag

with the following HISPID5 restrictions:

  • possibly
  • probably
  • ?
  • not


[edit]

Type Status (tsta)

Maps to: /SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/TypeStatus

with the following HISPID5 restrictions (in full as listed here, rather than codified form - ISO, HOLO etc) :

  • epitype
  • holotype
  • isotype
  • isolectotype
  • isoneotype
  • isoparatype
  • isoparalectotype
  • isosyntype
  • kleptotype
  • lectotype
  • neotype
  • paratype
  • paralectotype
  • syntype
  • topotype
  • type (type material of unknown status)


[edit]

Basionym (basnam)

Maps to: [http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcept0604 /SpecimenUnit/NomenclaturalTypeDesignations/NomenclaturalTypeDesignation/ TypifiedName/FullScientificNameString]



[edit]

Verification

[edit]

Verification Level Flag (vlev)

Maps to: /Identifications/Identification/VerificationLevel

with the following HISPID5 restrictions:

  • 0 - (zero) The name of the record has not been checked by any authority - includes temporary sorting determinations
  • 1 - The name of the record determined by comparison with other named plants
  • 2 - The name of the record determined by a taxonomist or by other competent persons using herbarium and/or library and/or documented living material
  • 3 - The name of the plant determined by taxonomist engaged in systematic revision of the group
  • 4 - The record is part of type gathering or propagated from type material by asexual methods

Comments: If it is not known whether the name of the record has been verified by an authority, then this field must not be filled.


[edit]

Verifier's Name (vnam)

Maps to: /Identifications/Identification/Identifiers/IdentifiersText (and / or atomised /Identifications/Identification/Identifiers/Identifier)


[edit]

Verification Date (vdat)

Maps to: /Identifications/Identification/Date/ISODateTimeBegin

see notes under Collection Date (cdat).


[edit]

Text Verification Date (texvdat)

Maps to: /Identifications/Identification/Date/DateText


[edit]

Verification Literature (vlit)

Maps to: Identifications/Identification/References/Reference/TitleCitation


[edit]

Verification History (vhist)

Maps to: /Identifications/IdentificationHistory (or atomised as a separate Identifications)


[edit]

Determinavit (det)

Maps to: /Identifications/Identification/Identifiers/IdentifierRole

with the following HISPID5 restrictions (retain abbreviation reflecting standard practice):

  • conf. - confirmavit (identifier has agreed with i.e. confirmed the identification).
  • cit. - citavit (used when a specimen is cited in a publication).
  • det. - determinavit (the identifier has determined the identification).
  • scrips. - scripsit (identification communicated in written correspondence).
  • vid. - vidit (identification seen and communicated verbally).
  • upg. - upgrade (taxonomic update based on literature - where specimen not cited).
  • tss. - temporary sorting slip (used to temporarily name a specimen prior to critical examination).


[edit]

Rank Qualifier Flag (rkql)

Maps to: ~/TaxonIdentified/ScientificName/IdentificationQualifier[@insertionpoint]

Notes: There is a different vocabulary between HISPID and ABCD. Suggest the following mappings:

This is a tricky mapping because it depends on the level to which the specimen has been identified. From my reading, the mapping would be:

  • B : no mapping possible
  • F : 1 (because if identified to family this has to be included in FullScientificNameString see HigherTaxa)
  • G : 1
  • S : 2
  • I : 3
  • J : 4 (if there was a 4 in ABCD)
  • C : no mapping possible


[edit]

Identification Qualifier (idql)

Maps to: ~/TaxonIdentified/ScientificName/IdentificationQualifier

with the following HISPID5 restrictions:

  • aff. - Akin to or bordering
  • cf. - Compare with
  • incorrect - Incorrect
  • forsan - Perhaps
  • near - Close to
  • ? - Questionable
[edit]

Identification Comments (idcom)

Not yet mapped - new in HISPID4 (namcom was used twice in HISPID3 - one for comments on the identification and one for comments on the name and in some drafts of HISPID this field has been referred to as namcom2)

[edit]

Location

[edit]

Country (cou)

Maps to: Gathering/Country/Name

Restrict (by agreement - not enforced in schema) - to full official country names in mixed case as used in ISO 3166-1.


[edit]

ISO code for Country of Origin (iso)

Maps to: /Gathering/Country/ISO3166Code

notes: HISPID constrained the data to the 2-letter ISO3166 value, where ABCD suggests that any of the 2, 3 or 4 letter ISO3166 values is acceptable.


[edit]

World Geographic Scheme (wgs)

Maps to: /Gathering/NamedAreas/NamedArea/AreaCodeStandard = e.g. "TDWG World Geographical Scheme for Recording Plant Distributions version 1" + /Gathering/NamedAreas/NamedArea/AreaCode

notes: (both required.)


[edit]

Primary Recording Unit (pru)

Maps to HISPID extension: /HispidUnit/PrimaryRecordingUnit

also maps to (for access by ABCD aware applications): Gathering/NamedAreas/NamedArea/AreaName + Gathering/NamedAreas/NamedArea/AreaClass="state"

notes: usually includes state or territory. Restrict to mixed case (by agreement - not enforced in schema).


[edit]

Secondary Subdivision of Country of Origin (sru)

Maps to: /Gathering/NamedAreas/NamedArea/AreaClass = "Australian Herbarium Region" + /Gathering/NamedAreas/NamedArea/AreaName

notes: when transferring data related to other standard subdivisions of Australia, use AreaClass with a standard area class name, such as:

  • IBRA - Interim Biogeographic Regionalisation for Australia
  • IMCRA - Interim Marine and Coastal Regionalisation for Australia
  • LGA - Local Government Association

The abbreviated form should be used if it is widely understood.


[edit]

Special Geographic Unit (sgu)

Maps to: /Gathering/NamedAreas/NamedArea/AreaClass = "Special Geographic Unit" + /Gathering/NamedAreas/NamedArea/AreaName

notes: see Secondary Subdivision of Country of Origin (sru) above.


[edit]

Locality (loc)

Maps to: /Gathering/LocalityText

notes: if no locality return "without locality"


[edit]

Altitude (alt)

Maps to: Gathering/Altitude/MeasurementOrFactAtomised/LowerValue + Gathering/Altitude/MeasurementOrFactAtomised/UnitOfMeasurement = "metres"

[edit]

Accuracy of Altitude (altacy)

Maps to: /Gathering/Altitude/MeasurementOrFactAtomised/Accuracy

Notes: ABCD has a single accuracy element whereas HISPID has accuracy for upper and lower values.


[edit]

Maximum Altitude (altx)

Maps to: /Gathering/Altitude/MeasurementOrFactAtomised/UpperValue


[edit]

Accuracy of Maximum Altitude (altacyx)

Maps to: /Gathering/Altitude/MeasurementOrFactAtomised/Accuracy

Notes: ABCD has a single accuracy element whereas HISPID has accuracy for upper and lower values.


[edit]

Source of Altitude Accuracy Flag (altsou)

Maps to: /Gathering/Altitude/MeasurementOrFactAtomised/MeasuredBy

with the following HISPID5 restrictions:

  • collector
  • compiler
  • automatically generated


[edit]

Method of Altitude Determination (altdet)

Maps to: /Gathering/Altitude/MeasurementOrFactAtomised/Method

with the following HISPID5 restrictions:

  • dem - Digital Elevation Model
  • gps - Global Positioning System (GPS) unit
  • field estimate
  • altimeter
  • map
  • unknown


[edit]

Depth (dep)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/LowerValue + /Gathering/Depth/MeasurementOrFactAtomised/UnitOfMeasurement = "metres"


[edit]

Accuracy of Depth (depacy)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/Accuracy notes: ABCD has a single accuracy element whereas HISPID has accuracy for upper and lower values.


[edit]

Maximum Depth (depx)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/UpperValue


[edit]

Accuracy of Maximum Depth (depacyx)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/Accuracy notes: ABCD has a single accuracy element whereas HISPID has accuracy for upper and lower values.


[edit]

Source of Depth Accuracy Flag (depsou)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/MeasuredBy

with the following HISPID5 restrictions:

  • collector
  • compiler
  • automatically generated

notes: This field is new in HISPID5


[edit]

Method of Depth Determination (depdet)

Maps to: /Gathering/Depth/MeasurementOrFactAtomised/Method


[edit]

Latitude, Degree (latdeg)

The following mappings relate to the geocode as a whole

Maps to: Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal + Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal + Gathering/SiteCoordinateSets/SiteCoordinates/SpatialDatum

AND / OR Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMZone + Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMEasting + Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMNorthing

AND / OR Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMText


Additionally transfer in degrees, minutes, seconds by concatenating all values comma separated into the Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/CoordinatesText element e.g. "32,25,,S,112,32,12,E"

OR transfer the date in the HISPID extension under: 

/HispidGathering/CoordinatesDMS/LatitudeDegrees
/HispidGathering/CoordinatesDMS/LatitudeMinutes
/HispidGathering/CoordinatesDMS/LatitudeSeconds
/HispidGathering/CoordinatesDMS/LatitudeDirection
/HispidGathering/CoordinatesDMS/LongitudeDegrees
/HispidGathering/CoordinatesDMS/LongitudeMinutes
/HispidGathering/CoordinatesDMS/LongitudeSeconds
/HispidGathering/CoordinatesDMS/LongitudeDirection

and other optional fields 

/HispidGathering/CoordinatesDMS/SpatialDatum
/HispidGathering/CoordinatesDMS/AccuracyStatement
/HispidGathering/CoordinatesDMS/CoordinateErrorDistanceInMeters
/HispidGathering/CoordinatesDMS/CoordinateErrorMethod
/HispidGathering/CoordinatesDMS/PointRadiusSpatialFit
/HispidGathering/CoordinatesDMS/CoordinatesText

Notes: Wherever possible the geocode should be transferred using the ABCD CoordinatesLatLong elements (in decimal degrees). The HISCOM community has a need to transfer verbatim degrees, minutes and seconds in discrete fields, so this is included in the extension. Recommendation to ABCD to include these geocode fields under CoordinatesLatLong.

[edit]

Latitude, Minutes (latmin)

See notes under Latitude, Degree (latdeg) above.


[edit]

Latitude, Seconds (latsec)

See notes under Latitude, Degree (latdeg) above.


[edit]

Latitude, Direction Flag

See notes under Latitude, Degree (latdeg) above.


[edit]

Longitude, Degree (londeg)

See notes under Latitude, Degree (latdeg) above.


[edit]

Longitude, Minutes (lonmin)

See notes under Latitude, Degree (latdeg) above.


[edit]

Longitude, Seconds (lonsec)

See notes under Latitude, Degree (latdeg) above.


[edit]

Longitude, Direction Flag

See notes under Latitude, Degree (londeg) above.

latsec, latdir, londeg, lonmin, lonsec, londir, sgp) ==


[edit]

Spatial Datum (spadat)

Maps to: /Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/SpatialDatum

notes: Use only accepted datum abbreviations, e.g. AGD66, AGD84, WGS84, GDA94. New in HISPID4


[edit]

Spatial Grid, Projection (sgp, spapro)

Maps to: Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMDatum


[edit]

Spatial Grid Zone (sgz)

Maps to: /Gathering/SiteCoordinateSets/SiteCoordinatesCoordinatesUTM/UTMZone

notes: New in HISPID4.


[edit]

Spatial Grid, Easting (sge)

Maps to: /Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMEasting

notes: No hemisphere required for easting


[edit]

Spatial Grid, Northing (sgn)

Maps to: /Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMNS + /Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesUTM/UTMNorthing

notes: UTMNS represents the hemisphere ("N" or "S") of the associated Northing. ABCD hasn't restricted this field - should we?


[edit]

Geocode Precision (geoacy)

Maps to: Gathering/SiteCoordinateSets/SiteCoordinates/ CoordinatesLatLong/CoordinateErrorDistanceInMeters

Notes: Note: Error needs to take account of any rounding done for coordinates. Historically, Australian herbaria have used classes of geocode accuracy to record the accuracy in metres - refer to URL here (and BILL and JIM's spreadsheets) *****


[edit]

Geocode Source (geosou)

Maps to: Gathering/SiteCoordinateSets/SiteCoordinateSets/SiteCoordinates/CoordinateMethod

with the following HISPID5 restrictions:

  • collector
  • compiler
  • generalised arbitrary point
  • automatically generated
  • gps
  • topo
  • unknown


[edit]

Generalised Locality Information (nnp)

Maps to: Gathering/NearNamedPlaces/NamedPlaceRelation/NearNamedPlace

Notes: If no value is available, use the phrase not available



[edit]

Habitat

[edit]

Habitat (hab)

Maps to: /Gathering/Biotope/Text


[edit]

Topography (top)

Maps to: /Gathering/AreaDetail


[edit]

Aspect (asp)

Maps to: Gathering/Aspect/Ordination

notes: ABCD has these values:

  • N
  • S
  • E
  • W
  • NE
  • SE
  • NW
  • SW
  • Open
  • Closed

Suggest that ABCD include the following also:

  • NNE
  • ESE
  • ESE
  • SSE
  • NNW
  • WNW
  • WSW
  • SSW


[edit]

Substrate (sub)

Maps to HISPID extension: /HispidUnit/HispidGathering/Substrate

or if you really want to use ABCD concept: /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/Parameter = "substrate" + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/LowerValue + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/IsQuantitative = "false"


[edit]

Soil Type (soil)

Maps to HISPID extension: /HispidUnit/HispidGathering/SoilType

or if you really want to use ABCD concept: /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/Parameter = "soil" + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/LowerValue + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/IsQuantitative = "false"


[edit]

Vegetation (veg)

Maps to HISPID extension: /HispidUnit/HispidGathering/Vegetation

or if you really want to use ABCD concept: /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/Parameter = "vegetation" + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/LowerValue + /Gathering/Biotope/MeasurementsOrFacts/MeasurementOrFactAtomised/IsQuantitative = "false"


[edit]

Associated Species (asspp)

Maps to: /Gathering/Synecology/Comment AND / OR atomized list of /Gathering/Synecology/AssociatedTaxa



[edit]

Collection

[edit]

Collector's Name(s) (cnam)

Maps to: If institution is able to provide atomised collectors then use Gathering/Agents/GatheringAgent/AgentText + Gathering/Agents/GatheringAgent[@sequence] + optional Gathering/Agents/GatheringAgent[@primarycollector] = "true" ("false" for cnam2)

Fallback: when the collectors can not be broken into individual items, all collectors can be provided as a single string in Gathering/Agents/GatheringAgentsText.

Notes: In AgentText, follow HISPID formatting (surname, initial) for people. Sorting starts on primarycollector attribute, and continues with sequence attribute. Sequence attribute starts at 1 and increments according to each individual collector. See also cper. Where possible, provide atomised data using the Person and/or Organisation elements.


Notes: suggest to ABCD working group they add a boolean "perCollector" attribute to Agents/GatheringAgent. In the mean time it can be accommodated by appending "(per)" to the last AgentText in the repeatable Agents/GatheringAgent (that with the largest @sequence attribute).

[edit]

Collector's Number (cid)

Maps to: CollectorsFieldNumber


[edit]

Secondary Collector's Name (cnam2)

See Collector

notes: ABCD GatheringAgent is a repeating element, so addtional collectors will go there. In AgentText, follow HISPID formatting. Sorting starts on primarycollector attribute, and continues with sequence attribute. Sequence attribute starts at 1 and increments according to each individual collector.


[edit]

SecondaryCollectorIdentifier (cid2)

Maps to HISPID extension: /HispidUnit/SecondaryCollectorIdentifier

Note: This field was not available in HISPID3.

HISPID Comments New - ABCD Content Definition Group should add a Collectors Field Number attribute or element to GatheringAgent to enable the interchange of multiple personal collectors' numbers.


[edit]

Collection Date (cdat)

Maps to: Gathering/GatheringDateTime/ISODateTimeBegin


[edit]

Second Collection Date (cdat2)

Maps to: /Gathering/DateTime/ISODateTimeEnd


[edit]

General Text Collection Date (texcdat)

Maps to: /Gathering/DateTime/DateText



[edit]

Kind of Collection

[edit]

Kind of Collection & Additional Components Flag (ckin)

Maps to: /KindOfUnit

notes: Use any number of comma-separated values in alphabetic order from the set:

  • alcohol
  • bark
  • boxed
  • cytological
  • fruit
  • illustration
  • image
  • other
  • packet
  • pollen
  • print
  • reference
  • seed
  • sheet
  • slide
  • transparency
  • vertical
  • wood

For example: alcohol, print, sheet.

Restrict by agreement - not restricted in ABCD schema.


[edit]

Voucher Flag (vou)

Maps to: /MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised/Parameter = "Voucher" + /MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised/IsQuantitative = "false" + /MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised/LowerValue


[edit]

Number of Sheets, Parts (numshe)

Maps to HISPID extension: /HispidUnit/NumberOfSheets


[edit]

Type of Cultivated Material (tcul)

Maps to HISPID extension: /HispidUnit/FieldCollectionComponent

notes: We cannot use /BotanicalGardenUnit for this information, because strictly it is used for transferring data about living accessions i.e. the current unit is the living plant. However in HISPID, the unit is the voucher specimen and the fields tcul, prot and prohis relate to living material associated with the voucher. Therefore to transfer this data under these ABCD fields it would require creating a new unit for the living accession and then use the /Associations elements to establish the link between the voucher and the living accession. Easiest to create some more generalised fields under MeasurementsOrFacts

After discussion at meeting, agreement that the field needs to be extended in definition to "material types gathered at time of collection", the element might be named: FieldCollectionComponent.

Allowed values:

  • cutting
  • cytological
  • division
  • dna
  • photograph
  • plant
  • seed


[edit]

Provenance Type Flag (prot)

Maps to HISPID extension: /HispidUnit/ProvenanceType

notes: see tcul above for why we can't use the BotanicalGardenUnit fields.

Allowed values:

  • propagule from wild source plant in cultivation
  • accession not of wild source
  • insufficient data to determine category
  • accession of wild source


[edit]

Propagation History Flag (prohis)

Maps to HISPID extension: /HispidUnit/PropagationHistory

notes: see tcul above for why we can't use the BotanicalGardenUnit fields.

Allowed values:

  • i - Individual Wild plant(s)
  • s - Seed or plant arising from seed
  • sa - From open pollination (from the wild)
  • sb - From controlled pollination
  • sc - From plants that are isolated and definitely self-pollinated
  • v - Plant material derived asexually
  • va - From vegitative reproduction (including vegetative apomixis
  • vb - From apomictic cloning (agamospermy)
  • u - Propagation history uncertain or no information
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Donor Type Flag (dont)

Maps to HISPID extension : HispidUnit/DonorType

Allowed values:

  • b - botanic garden or arboretum
  • e - expedition
  • g - gene bank
  • he - herbarium [Note: This is a new value]
  • h - horticultural association or garden club
  • i - individual
  • m - municipal department
  • n - nursery or other commercial establishment
  • o - other
  • r - other research
  • s - staff of institution to which record system applies
  • v - university department
  • u - unknown or not applicable
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Donor (don)

Maps to: /SpecimenUnit/Acquisition/AcquiredFrom


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Donor's Accession Identifier (donacc)

Maps to: /SpecimenUnit/History/PreviousUnits/PreviousUnit/PreviousUnitID



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Additional Data

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Collection Notes (cnot)

Maps to: /Gathering/Notes

Notes: Field definition is really "plant notes" as field can contain other notes describing the plant.


[edit]

Frequency (fre)

Maps to HISPID extension: /HerbariumUnit/Frequency


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Plant Occurrence - Native (posnat)

Maps to: ~/HerbariumUnit/NaturalOccurrence (new in ABCD2.06b)

with the following HISPID5 restrictions:

  • native
  • assumed to be native
  • doubtfully native
  • formerly native (extinct)
  • not native
  • recorded as native in error
  • no information
  • none of the above
  • not applicable

notes: See http://www.tdwg.org/poss_standard.html#2 for details. The following values apply:


[edit]

Plant Occurrence and Status Scheme 2 (poscul)

Maps to: /HerbariumUnit/CultivatedOccurrence (new in ABCD2.06b)

notes: See http://www.tdwg.org/poss_standard.html#5 for details. The following values apply:

with the following HISPID5 restrictions:

  • cultivated
  • assumed to be cultivated
  • doubtfully cultivated
  • formerly cultivated (extinct)
  • not cultivated
  • recorded as cultivated in error
  • no information
  • none of the above
  • not applicable

notes: See http://www.tdwg.org/poss_standard.html#5 for details. The following values apply:


[edit]

Plant Occurrence and Status Scheme 3 (posint)

Maps to HISPID extenstion: /HispidUnit/IntroductionAgency

with the following values:

  • introduced by humans
  • introduced by natural means
  • no information
  • not applicable

Notes: See http://www.tdwg.org/poss_standard.html#4 for details. The following values apply:


[edit]

Habit, Life Form (form)

Maps to HISPID extension: /HispidUnit/LifeForm


[edit]

Phenology (phe)

Maps to HISPID extension: /HispidUnit/Phenology

with the following values:

  • bisexual flowers
  • buds
  • female cones
  • female flowers
  • flowers
  • male/female cones
  • male cones
  • male flowers
  • fruit
  • fruiting cones
  • gametophyte
  • sporophyte
  • spore-bearing bodies
  • fertile
  • sterile
  • leafless


[edit]

Non-computerised Data Flag (noncom)

Maps to HISPID extension: /HispidUnit/NonComputerisedDataFlag

notes: we are now using 'true' or 'false' instead of HISPID vocabulary 'Y' and 'N'

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Miscellaneous Notes (misc)

Maps to: /Notes


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Destination of Replicates (desrep)

Maps to: /SpecimenUnit/DuplicatesDistributedTo (new in ABCD2.06b)

Notes: restrict by a regexp??



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Loan

[edit]

Loan Identifier (loaid)

Maps to: /HerbariumUnit/LoanIdentifier


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Loan Sequence Number (loanum)

Maps to: /HerbariumUnit/LoanSequenceNo


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Loan Destination (loades)

Maps to: /HerbariumUnit/LoanDestination


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Loan for Botanist (loabot)

Maps to: /HerbariumUnit/LoanForBotanist


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Loan Dispatch Method (loadis)

Maps to: /HerbariumUnit/LoanDespatchMethod


[edit]

Loan Date (loadat)

Maps to: /HerbariumUnit/LoanDate


[edit]

Loan Return Date (loaret)

Maps to: /HerbariumUnit/LoanReturnDate


[edit]

Data Entry and Edit

[edit]

Last Edit Date (moddat)

Maps to: Unit/DateLastEdited



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Fields no longer part of HISPID

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numrecords

Can be generated from XML instance document, so do we really need it? Could put it in the extension.


[edit]

nonstandard

Non-standard fields can be exchanged by using the extension mechanism of ABCD.


[edit]

fileaction

No equivalent in ABCD - we are more likely to be using pull than push, so this is a bit redundant as the receiving institution will know what they are using the data for.


[edit]

dataurl

no equivalent


[edit]

filedescriptor

no equivalent


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Second Hybrid Genus Name (genhy2)

New field: NameFormula

This will allow for infinite extension of hybrid formula ie a x b x c

[edit]

Second Hybrid Species Epithet (sphy2)

Maps to: ~/TaxonIdentified/ScientificName/FullScientificNameString

notes: Walter Berendsohn notes in his mapping of HISPID3 to ABCD 1.49d that "hybrid formulas are accommodated by ScientificName/FullNameString and not presently further atomised". This doesn't appear to have changed in ABCD 2.06.

HISPID Comments Exclude - hybrids are dealt with in Name Formula, so this is not needed.


[edit]

Second Hybrid Infraspecific Rank flag (isprkhy2)

Maps to: ~/TaxonIdentified/ScientificName/FullScientificNameString

notes: Walter Berendsohn notes in his mapping of HISPID3 to ABCD 1.49d that "hybrid formulas are accommodated by ScientificName/FullNameString and not presently further atomised". This doesn't appear to have changed in ABCD 2.06.

HISPID Comments Exclude - hybrids are dealt with in Name Fomula, so this is not needed.


[edit]

Second Hybrid Infraspecific Epithet (isphy2)

Maps to: ~/TaxonIdentified/ScientificName/FullScientificNameString

notes: Walter Berendsohn notes in his mapping of HISPID3 to ABCD 1.49d that "hybrid formulas are accommodated by ScientificName/FullNameString and not presently further atomised". This doesn't appear to have changed in ABCD 2.06.

HISPID Comments Exclude - hybrids are dealt with in Name Fomula, so this is not needed.


[edit]

Second Hybrid of the Second Infraspecific Rank Flag (isp2rkhy2)

Maps to: ~/TaxonIdentified/ScientificName/FullScientificNameString

notes: Walter Berendsohn notes in his mapping of HISPID3 to ABCD 1.49d that "hybrid formulas are accommodated by ScientificName/FullNameString and not presently further atomised". This doesn't appear to have changed in ABCD 2.06.

HISPID Comments Exclude - hybrids are dealt with in Name Formula, so this is not needed.


[edit]

Second Infraspecific Rank Flag (isp2rk)

Maps to: Does not map

notes: Only lowest level rank is included in ABCD.

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